PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA124G00010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 124aa    MW: 14353.2 Da    PI: 8.1929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA124G00010genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.5e-1717981097
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                  ++s  l +p +f e+   +   + t +l+    ++W+v+l  +k+++ +++t+GW+ F+++n+L +g+f++F +dg+++f   v+++
  AA124G00010 17 KTSSESLAIPLSFNEHLRDP--LPLTAKLQGCGPKVWKVNL--KKTQQYIYFTNGWRLFAQENNLTDGEFLTFVYDGSRTF--EVSIY 98
                 4566779******9555544..8899***************..****99**************************997777..67665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-216103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.2398101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-208102IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-16999No hitNo description
SMARTSM010193.5E-1710101IPR003340B3 DNA binding domain
PfamPF023624.4E-151699IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MANNGTLPRF FIGFLSKTSS ESLAIPLSFN EHLRDPLPLT AKLQGCGPKV WKVNLKKTQQ  60
YIYFTNGWRL FAQENNLTDG EFLTFVYDGS RTFEVSIYNR YGCKETRGLV NQQDIMDLDD  120
QWRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-2311033104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647921.17e-45PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_013647919.17e-45PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_013647918.17e-45PREDICTED: B3 domain-containing protein REM20-like
RefseqXP_013647917.17e-45PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV56e-38REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A0D3CTK86e-44A0A0D3CTK8_BRAOL; Uncharacterized protein
STRINGBra003130.1-P5e-42(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-39B3 family protein